Upgrading R + Bioconductor

I have just learnt that Bioconductor developers should NOT always use the development version…

Get GSEA done!

Thousands of times I’ve heard of the Gene Set Enrichment Analysis or GSEA. Thousands of times I tried to run it and thousands of times I failed…

How to start working with R

I’ve just come across a great blog post about the best way of starting data analysis in R…

SC3 poster

Some photos from the Functional Genomics & Systems Biology conference…

SC3 - consensus clustering of single cell RNA Seq data

Today I presented the SC3 tool that I am developing for clustering of single-cell RNA-Seq data…

My new paper is out!

My paper ‘Perturbations of PIP3 signalling trigger a global remodelling of mRNA landscape and reveal a transcriptional feedback loop’ has been published in Nucleic Acids Research journal…

ISMARA client

ISMARA is a very nice tools that allows one to obtain transcription factor activities from only RNA-Seq or Chip-Seq data…

Bioinformatics Algorithms

Today I received one of the best recent Bioinformatics books - Bioinformatics Algorithms by Phillip Compeau & Pavel Pevzner…

ISMB 2015 Poster

At ISMB-201 in Dublin I presented a poster on my previous PostDoc project: ‘Perturbations of PIP3 signalling trigger a global remodelling of gene expression and reveal a transcriptional feedback loop’…

Job applications

Below is a timeline of my job applications since PhD. You can drag it to see the latest applications…